Here's the problem with bass boost, especially in your case. You used a 50hz tone to set gains. With no eq thats fine as a -3 tone is a -3 within the bandpass of the woofer, more or less. Bass boost boosts bass, usually at 45hz. Your gains are set to give you just under your regular wattage, but as you get near 45hz your going to be asking even more of the amp since that's what you have boosted. If you used say 6dbs of boost, since a 50hz tone, which is still near 45 (it's seeing boost from the bass boost too, just not as much), your probably still getting another 1-2dbs extra at 45hz and that's pushing you into clipping. If you want to use bass boost (you shouldn't, it doesn't boost anything, your amp can only put out so much power, all your doing is making 45hz really loud, which sounds like shit, that's why people dont' tune at 45hz for daily) then you need to use a 45hz tone to set gains as well.