Seems you've set it up correctly. Unfortunately it's hard to diagnose from my keyboard. One thing I would try is to strip the system down to minimum - replace the Sony amp with the other 2 channels of the Alpine. It will take a 2 ohm load, but using just 1 set of 6x9s would simplify the install more. See if you can get a minimum configuration to work, then work up from that.
BTW the Coustic crossovers get very high ratings in the reviews. Being 10 yrs old doesn't mean anything if it hasn't been abused.