Here's what you do..
1. Alpine decks are notorious for not giving pre out voltage unless the SUB gain on the deck is at 15 (full) and im not talking about LOW.
2. You need a Digital Multimeter, Unhook the wires that go to the box from the box the - and + and test them using the multimeter, just wrap the wire around each point and turn it on V~ 200, im assuming the sub is wired 4 ohm. You should be looking for a voltage of around ~ 60v from the amp into those speaker wires.
3. If you are not getting 60v then turn the gain up slowly with the DMM attached until you get that..
4. If your sub is set at 2 ohm then you want around 42v.
Leave all LOW and bass boost to 0.
You will hear lots of BOOM.
Also make sure the LPF is set to between 80 and 100.