probably so...I just know the way I do it works for me and the people around here. And when using 2 batterys the size of the wire doesn't really matter as long as the battery is getting power. What matters is the size of wire from the battery to the amp. like i said after i corrected myself your battery under your hood is charged off a 6 gauge wire running from the alternator. As soon as that lil tiny wire hits the battery the battery will still put a full current out even though it's got a little wire charging it. that would explain how systems with only one battery work better with 0 gauge. and that would also explain why 0 guage would work best from only the battery in the back to the amp. because that battery in the back would have a full charge regardless of the wire size....well you wouldn't want to go to small and melt it or anything.
No man .... You are still simply WRONG. Please don't confuse this guy asking for help , when you are fundamentally wrong.
#1 - " What matters is the size of the battery to the amp " you said. This is WRONG.
What matters is the size of the wiring BEFORE the battery !
#2 - Saying the under hood battery is charged by a 6 ga wire from the alternator is also WRONG .... Because the FIRST thing everyone should do is replace this wire with 0 gauge ... This is part of the Big 3.
Let me respectfully educate you here , and you can then make your system even better ......
Your car's entire electrical system stems from the alternator and battery.
If you don't upgrade here to begin with , NO OTHER wire in the system is going to matter !
You first have to upgrade the alternator's ground wire , and positive wire to the battery. This get's the MOST current to the battery. You then have to upgrade ALL of the battery's grounds , as well as ALL under hood engine block to chassis grounds , and ANY OTHER main grounds under your hood.
This maintains the high current that you have coming from the alternator's upgraded wiring. You next have to get the runs from the battery back to the amps ran with the SAME size upgraded wiring .... This continues keeping the current as unrestricted as possible , and lastly , you have to ground with the SAME upgraded size wiring.
This is THE CORRECT WAY to do it, and there is no substitute. HTH