Also, I think you may be going about this the wrong way. Remember, in the equation it uses Net internal volume, which is the volume after all displacements (port, sub, bracing, etc). So, for your new box, you would not use 3cuft for the volume of the box in the equation to get port length becuase that is gross and not net.
You really need to figure out what internal volume you want (say, 2.5cuft net for example), and use that to figure out the dimensions for the port. After you have both those figured out, then determine the physical dimensions of the box that will achieve that desired Net box volume.