Ive been to various shops in this area, ranging from Best Buy and circuit city, to what looks like the ghetto hole in the wall that turns out to have a 50 thousand dollar show car full of custom fab work in the garage and brands like Herz, Eclipse, and Focal in the show room. Also been to average mid price shops and to clean, more expensive higher end shops in the nice part of town. Never had issues with the wiring but Ive watched them set my gains every time. Always the same. They turn on my IPOD, use the first song they find, and do it by ear in about 5 minutes. Nobody ever asks me what I listen to normally or what playback device I use most often. Never seen test tones, scopes, or meters invovled. I guess most of them don't bother figuring the average listener won't hear the difference.
Seems like the places that do it high tech text book style are not so common as youd think from reading these boards.