Think this guy's on the right track. Phasing issue. And this enclosure is 1 cubic foot housing dual 12s????somethins screwed up.........So it sounds better with one sub than 2? Did you try switching your + and - on one sub?
The belle is a 5 channel amp- 1100 rms for sub and 50x4 rms for mids/highs, all in one amp.