First question I would ask here is if you are running a Pioneer radio. If so, you may have roasted your pico fuse since they blow for the dumbest of things...
If you are not running a Pioneer, and even if you are, I would suggest that you check your grounds at the head unit and the amplifier. Make certain that they are connected to some shiny sheet metal, preferably at a location that leads to the frame of the vehicle.
EDIT: In after you solved your problem... Don't know how I missed page 2, lol.