I joined this forum just to say thank you for this thread.
I had an extremely annoying alternator whine coming from my 6x9s, tried everything to fix it, ripped my whole car apart on about 4 separate occasions. I managed to reduce it a little, but every time a song changed/went quite, there it was pestering me from the back of my car. Bought a ground loop isolator as a last resort which came in the post this morning, and even that didn't solve it. I had literally run out of ideas so i just came to the conclusion that i woudl have to live with it, as annoying as it was. Did a google search for about the 20th time on the subject and came across this page which i hadn't seen before, did that thing with grounding the RCAs on the head unit and success! Absolutely no noise whatsoever any more. I am over the moon. I owe you a pint mate. Thank you!