I'd use a computer version. Heck, If I was going to the trouble of using a computer for tuning, I'd get MLS instead of a RTA. Much more tuning ability. 2 main things to remember when Eq'ing in a car using software. First off, find your dead areas. Some areas on your EQ will not respond directly to the EQ. A 2db increase on your EQ may not actually increase your RTA reading. If that's the case, tune it in by ear. Second thing to remember , it's almost always better to boost than cut. If you have an area that doesnt' respond, lower the areas that do to match it, dont' raise it a bunch to get a 1db increase in that area. However, you may need to lower the other areas quite a bit, or maybe not at all, a dead area almost always needs to be tuned BY EAR. At the end of the day, if it sounds bad to you, it doesn't matter if you think it's correct, your not competing.
PS. Swirl your mic around your head area when it's taking a reading, you need to get an average of the area. The RTA, due to reflections and what not- can be quite different from within 2 inches of each mic plament!