I'd say the stock head unit is sending a pretty dirty signal. The LOC just amplifies that signal, nothing gets cleaned up So basically you were getting a dirty signal from the get go. Probably the Reason why your hifonics blew in the first place.
ALSO
what DB test tone were you using? If you are using a 0 DB test tone, it could be why you are clipping prematurely too because your music might not even get close to 0 db. Most rock, mainstream and oldies rap are like -6 to -12 db
Here's how to determine what db test tone you should use along with how to generate such test tone
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